IL_3JAJ_110
3D structure
- PDB id
- 3JAJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the engaged state of the mammalian SRP-ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.75 Å
Loop
- Sequence
- CGAAGG*UGUUGACG
- Length
- 14 nucleotides
- Bulged bases
- 3JAJ|1|5|A|3663, 3JAJ|1|5|U|3679, 3JAJ|1|5|C|3683
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JAJ_110 not in the Motif Atlas
- Homologous match to IL_5TBW_083
- Geometric discrepancy: 0.1259
- The information below is about IL_5TBW_083
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_64509.1
- Basepair signature
- cWW-tWW-tWW-tSS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
3JAJ|1|5|C|3660
3JAJ|1|5|G|3661
3JAJ|1|5|A|3662
3JAJ|1|5|A|3663
3JAJ|1|5|G|3664
3JAJ|1|5|G|3665
*
3JAJ|1|5|U|3677
3JAJ|1|5|G|3678
3JAJ|1|5|U|3679
3JAJ|1|5|U|3680
3JAJ|1|5|G|3681
3JAJ|1|5|A|3682
3JAJ|1|5|C|3683
3JAJ|1|5|G|3684
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain A
- Ribosomal protein uL2
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
- Chain p
- Ribosomal protein eL43
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