Motif IL_64509.1 Version IL_64509.1 of this group appears in releases 3.80 to 3.89
#S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name | 1 | 2 | 3 | 4 | 5 | 6 | break | 7 | 8 | 9 | 10 | 11 | 1-11 | 2-10 | 3-9 | 4-8 | 6-7 | 7-10 | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
1 | IL_8C3A_088 | 8C3A | 0.0000 | 3 | Kink-turn related (H) | 1 | LSU rRNA | U | 2151 | G | 2152 | U | 2154 | G | 2155 | A | 2156 | A | 2158 | * | U | 2134 | G | 2135 | A | 2136 | G | 2138 | G | 2139 | cWW | tWW | tWW | tSS | ncSs | |
2 | IL_5TBW_083 | 5TBW | 0.0807 | 3 | Kink-turn related | 1 | LSU rRNA | U | 2173 | G | 2174 | U | 2176 | G | 2177 | A | 2178 | G | 2180 | * | C | 2156 | G | 2157 | A | 2158 | G | 2160 | G | 2161 | cWW | tWW | tWW | tSS | cWW |
3D structures
Complete motif including flanking bases
Sequence | Counts |
---|---|
UGUUGACA*UGAUGG | 1 |
UGUUGACG*CGAUGG | 1 |
Non-Watson-Crick part of the motif
Sequence | Counts |
---|---|
GUUGAC*GAUG | 2 |
Release history
Release | 3.80 | 3.81 | 3.82 | 3.83 | 3.84 | 3.85 | 3.86 | 3.87 | 3.88 | 3.89 |
---|---|---|---|---|---|---|---|---|---|---|
Date | 2024-01-31 | 2024-02-28 | 2024-03-27 | 2024-04-24 | 2024-05-22 | 2024-06-19 | 2024-07-17 | 2024-08-14 | 2024-09-11 | 2024-10-09 |
Status | New id, 1 parent | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match | Exact match |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Kink-turn related (1)
- Kink-turn related (H) (1)
- Basepair signature
- cWW-tWW-tWW-tSS-L-cWW
- Heat map statistics
- Min 0.08 | Avg 0.04 | Max 0.08
Coloring options: