IL_3JAJ_112

3D structure

PDB id

3JAJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the engaged state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

3JAJ|1|5|A|3746, 3JAJ|1|5|A|3747

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAJ_112 not in the Motif Atlas

Homologous match to IL_8C3A_090

Geometric discrepancy: 0.0987

The information below is about IL_8C3A_090

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

3JAJ|1|5|U|3704
3JAJ|1|5|G|3705
*
3JAJ|1|5|U|3745
3JAJ|1|5|A|3746
3JAJ|1|5|A|3747
3JAJ|1|5|A|3748

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain A

Ribosomal protein uL2

Chain S2

Small subunit ribosomal RNA; SSU rRNA