IL_3JAJ_165

3D structure

PDB id

3JAJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the engaged state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GAUUAAG*CGC

Length

10 nucleotides

Bulged bases

3JAJ|1|S2|A|46

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAJ_165 not in the Motif Atlas

Homologous match to IL_4V88_387

Geometric discrepancy: 0.2746

The information below is about IL_4V88_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77761.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

3JAJ|1|S2|G|41
3JAJ|1|S2|A|42
3JAJ|1|S2|U|43
3JAJ|1|S2|U|44
3JAJ|1|S2|A|45
3JAJ|1|S2|A|46
3JAJ|1|S2|G|47
*
3JAJ|1|S2|C|479
3JAJ|1|S2|G|480
3JAJ|1|S2|C|481

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain S4

SRP14

Chain SX

Ribosomal protein uS12