IL_3JAJ_195
3D structure
- PDB id
- 3JAJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the engaged state of the mammalian SRP-ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.75 Å
Loop
- Sequence
- CUUUG*CUAGG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JAJ_195 not in the Motif Atlas
- Geometric match to IL_8VMB_003
- Geometric discrepancy: 0.2297
- The information below is about IL_8VMB_003
- Detailed Annotation
- Triple non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_49751.4
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
3JAJ|1|S2|C|803
3JAJ|1|S2|U|804
3JAJ|1|S2|U|805
3JAJ|1|S2|U|806
3JAJ|1|S2|G|807
*
3JAJ|1|S2|C|856
3JAJ|1|S2|U|857
3JAJ|1|S2|A|858
3JAJ|1|S2|G|859
3JAJ|1|S2|G|860
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SE
- Ribosomal protein eS4
- Chain SH
- Ribosomal protein eS7
- Chain SL
- Ribosomal protein uS17
- Chain SW
- Ribosomal protein uS8
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