IL_3JAJ_196
3D structure
- PDB id
- 3JAJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the engaged state of the mammalian SRP-ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.75 Å
Loop
- Sequence
- GAAAAAAUU*ACCGCAGC
- Length
- 17 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JAJ_196 not in the Motif Atlas
- Homologous match to IL_4V88_425
- Geometric discrepancy: 0.2705
- The information below is about IL_4V88_425
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_53064.1
- Basepair signature
- cWW-cWW-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
3JAJ|1|S2|G|807
3JAJ|1|S2|A|808
3JAJ|1|S2|A|809
3JAJ|1|S2|A|810
3JAJ|1|S2|A|811
3JAJ|1|S2|A|812
3JAJ|1|S2|A|813
3JAJ|1|S2|U|814
3JAJ|1|S2|U|815
*
3JAJ|1|S2|A|849
3JAJ|1|S2|C|850
3JAJ|1|S2|C|851
3JAJ|1|S2|G|852
3JAJ|1|S2|C|853
3JAJ|1|S2|A|854
3JAJ|1|S2|G|855
3JAJ|1|S2|C|856
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SE
- Ribosomal protein eS4
- Chain SJ
- Ribosomal protein uS4
- Chain SL
- Ribosomal protein uS17
- Chain SW
- Ribosomal protein uS8
Coloring options: