IL_3JAJ_208
3D structure
- PDB id
- 3JAJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the engaged state of the mammalian SRP-ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.75 Å
Loop
- Sequence
- CGAUGC*GGGCAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JAJ_208 not in the Motif Atlas
- Geometric match to IL_5TBW_476
- Geometric discrepancy: 0.2963
- The information below is about IL_5TBW_476
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31007.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 5
Unit IDs
3JAJ|1|S2|C|1098
3JAJ|1|S2|G|1099
3JAJ|1|S2|A|1100
3JAJ|1|S2|U|1101
3JAJ|1|S2|G|1102
3JAJ|1|S2|C|1103
*
3JAJ|1|S2|G|1129
3JAJ|1|S2|G|1130
3JAJ|1|S2|G|1131
3JAJ|1|S2|C|1132
3JAJ|1|S2|A|1133
3JAJ|1|S2|G|1134
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SA
- Ribosomal protein uS2
- Chain SB
- Ribosomal protein eS1
- Chain SN
- Ribosomal protein uS15
- Chain SR
- Ribosomal protein eS17
- Chain Sa
- Ribosomal protein eS26
- Chain Sb
- Ribosomal protein eS27
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