IL_3JAJ_209
3D structure
- PDB id
- 3JAJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the engaged state of the mammalian SRP-ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.75 Å
Loop
- Sequence
- GGAGUAUGG*CUGAAAC
- Length
- 16 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JAJ_209 not in the Motif Atlas
- Geometric match to IL_4V9F_012
- Geometric discrepancy: 0.3591
- The information below is about IL_4V9F_012
- Detailed Annotation
- 8x7 Sarcin-Ricin with CC bifurcated pair; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_59724.1
- Basepair signature
- cWW-L-R-L-R-cSH-tWH-tHS-R-L-cWW
- Number of instances in this motif group
- 1
Unit IDs
3JAJ|1|S2|G|1168
3JAJ|1|S2|G|1169
3JAJ|1|S2|A|1170
3JAJ|1|S2|G|1171
3JAJ|1|S2|U|1172
3JAJ|1|S2|A|1173
3JAJ|1|S2|U|1174
3JAJ|1|S2|G|1175
3JAJ|1|S2|G|1176
*
3JAJ|1|S2|C|1185
3JAJ|1|S2|U|1186
3JAJ|1|S2|G|1187
3JAJ|1|S2|A|1188
3JAJ|1|S2|A|1189
3JAJ|1|S2|A|1190
3JAJ|1|S2|C|1191
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain 5
- Large subunit ribosomal RNA; LSU rRNA
- Chain SX
- Ribosomal protein uS12
- Chain n
- Ribosomal protein eL41
Coloring options: