IL_3JAJ_222

3D structure

PDB id

3JAJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the engaged state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

ACUA*UUCU

Length

8 nucleotides

Bulged bases

3JAJ|1|S2|C|1403, 3JAJ|1|S2|U|1404

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAJ_222 not in the Motif Atlas

Homologous match to IL_4V88_456

Geometric discrepancy: 0.309

The information below is about IL_4V88_456

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_76458.1

Basepair signature

cWW-cSH-L-cWW

Number of instances in this motif group

2

Unit IDs

3JAJ|1|S2|A|1402
3JAJ|1|S2|C|1403
3JAJ|1|S2|U|1404
3JAJ|1|S2|A|1405
*
3JAJ|1|S2|U|1441
3JAJ|1|S2|U|1442
3JAJ|1|S2|C|1443
3JAJ|1|S2|U|1444

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SQ

Ribosomal protein uS9

Chain SU

Ribosomal protein uS10

Chain Sg

Ribosomal protein RACK1