IL_3JAJ_262
3D structure
- PDB id
- 3JAJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the engaged state of the mammalian SRP-ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.75 Å
Loop
- Sequence
- CGCCGG*CCGCG
- Length
- 11 nucleotides
- Bulged bases
- 3JAJ|1|5|C|2084
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JAJ_262 not in the Motif Atlas
- Geometric match to IL_7VYX_004
- Geometric discrepancy: 0.3325
- The information below is about IL_7VYX_004
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_71154.1
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 10
Unit IDs
3JAJ|1|5|C|2081
3JAJ|1|5|G|2082
3JAJ|1|5|C|2083
3JAJ|1|5|C|2084
3JAJ|1|5|G|2085
3JAJ|1|5|G|2086
*
3JAJ|1|5|C|2271
3JAJ|1|5|C|2272
3JAJ|1|5|G|2273
3JAJ|1|5|C|2274
3JAJ|1|5|G|2275
Current chains
- Chain 5
- 28S ribosomal RNA
Nearby chains
- Chain C
- Ribosomal protein uL4
- Chain F
- Ribosomal protein uL30
- Chain Q
- Ribosomal protein eL18
- Chain e
- Ribosomal protein eL32
- Chain r
- Ribosomal protein eL28
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