IL_3JAJ_285
3D structure
- PDB id
- 3JAJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the engaged state of the mammalian SRP-ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.75 Å
Loop
- Sequence
- UAUGGU*AACG
- Length
- 10 nucleotides
- Bulged bases
- 3JAJ|1|S2|G|113, 3JAJ|1|S2|G|114
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JAJ_285 not in the Motif Atlas
- Homologous match to IL_8P9A_380
- Geometric discrepancy: 0.4691
- The information below is about IL_8P9A_380
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_71194.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 29
Unit IDs
3JAJ|1|S2|U|110
3JAJ|1|S2|A|111
3JAJ|1|S2|U|112
3JAJ|1|S2|G|113
3JAJ|1|S2|G|114
3JAJ|1|S2|U|115
*
3JAJ|1|S2|A|348
3JAJ|1|S2|A|349
3JAJ|1|S2|C|350
3JAJ|1|S2|G|351
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain SE
- Ribosomal protein eS4
- Chain SI
- Ribosomal protein eS8
- Chain SL
- Ribosomal protein uS17
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