IL_3JAM_020

3D structure

PDB id

3JAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of 40S-eIF1A-eIF1 complex from yeast

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

UAUCAA*UUUCAACG

Length

14 nucleotides

Bulged bases

3JAM|1|2|U|312, 3JAM|1|2|C|350

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_43081.1

Basepair signature

cWW-tWH-cWW-tHS-tSS-tSS-R-cWW

Number of instances in this motif group

2

Unit IDs

3JAM|1|2|U|310
3JAM|1|2|A|311
3JAM|1|2|U|312
3JAM|1|2|C|313
3JAM|1|2|A|314
3JAM|1|2|A|315
*
3JAM|1|2|U|347
3JAM|1|2|U|348
3JAM|1|2|U|349
3JAM|1|2|C|350
3JAM|1|2|A|351
3JAM|1|2|A|352
3JAM|1|2|C|353
3JAM|1|2|G|354

Current chains

Chain 2

18S rRNA

Nearby chains

Chain I

eS8

Chain L

uS17

Chain X

uS12