Motif IL_43081.1 Version IL_43081.1 of this group appears in releases 2.0 to 2.0

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5	break		6		7		8		9		10		11		12	1-12	2-10	3-11	4-7	4-9	5-6	6-10	7-8
1	IL_1FJG_011	1FJG	0.0000	2	Kink-turn with non-sequential stacking (H)	A	SSU rRNA	C	242	A	243	C	245	A	246	G	247	*	C	277	G	278	A	279	G	281	A	282	C	283	G	284	cWW	tWH	cWw		tHS	cWW	ncsS	ncSH
2	IL_3JAM_020	3JAM	0.2057	2	Kink-turn with non-sequential stacking (H)	2	SSU rRNA	U	310	A	311	C	313	A	314	A	315	*	U	347	U	348	U	349	A	351	A	352	C	353	G	354	cWW	tWH	cWw	tSs	ntHS	cWW	ncsS

3D structures

Complete motif including flanking bases

Sequence	Counts
CAUCAG*CGACGACG	1
UAUCAA*UUUCAACG	1

Non-Watson-Crick part of the motif

Sequence	Counts
AUCA*GACGAC	1
AUCA*UUCAAC	1

Release history

Release	2.0
Date	2017-04-24
Status	New id, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: Kink-turn with non-sequential stacking (H) (2)
Basepair signature: cWW-tWH-cWW-tHS-tSS-tSS-R-cWW
Heat map statistics: Min 0.21 | Avg 0.10 | Max 0.21

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