IL_3JAM_046

3D structure

PDB id

3JAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of 40S-eIF1A-eIF1 complex from yeast

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

UUGUCAG*CUUGGAUUUA

Length

17 nucleotides

Bulged bases

3JAM|1|2|G|912

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_79378.1

Basepair signature

cWW-cWW-L-R-R-L-L-tHS-tSS-tSS-R-cWW

Number of instances in this motif group

2

Unit IDs

3JAM|1|2|U|892
3JAM|1|2|U|893
3JAM|1|2|G|894
3JAM|1|2|U|895
3JAM|1|2|C|896
3JAM|1|2|A|897
3JAM|1|2|G|898
*
3JAM|1|2|C|909
3JAM|1|2|U|910
3JAM|1|2|U|911
3JAM|1|2|G|912
3JAM|1|2|G|913
3JAM|1|2|A|914
3JAM|1|2|U|915
3JAM|1|2|U|916
3JAM|1|2|U|917
3JAM|1|2|A|918

Current chains

Chain 2

18S rRNA

Nearby chains

Chain B

eS1

Chain O

uS11