IL_3JAM_087

3D structure

PDB id

3JAM (explore in PDB, NAKB, or RNA 3D Hub)

Description

CryoEM structure of 40S-eIF1A-eIF1 complex from yeast

Experimental method

ELECTRON MICROSCOPY

Resolution

3.46 Å

Loop

Sequence

AUCGUU*AAAU

Length

10 nucleotides

Bulged bases

3JAM|1|2|C|114

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAM_087 not in the Motif Atlas

Homologous match to IL_8C3A_399

Geometric discrepancy: 0.5123

The information below is about IL_8C3A_399

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_54697.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

51

Unit IDs

3JAM|1|2|A|112
3JAM|1|2|U|113
3JAM|1|2|C|114
3JAM|1|2|G|115
3JAM|1|2|U|116
3JAM|1|2|U|117
*
3JAM|1|2|A|298
3JAM|1|2|A|299
3JAM|1|2|A|300
3JAM|1|2|U|301

Current chains

Chain 2

18S rRNA

Nearby chains

Chain E

eS4

Chain I

eS8

Chain L

uS17