IL_3JAN_008

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CCAGGU*GAGCAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_59702.1

Basepair signature

cWW-tSH-tWH-tHW-tHS-cWW-cWW

Number of instances in this motif group

6

Unit IDs

3JAN|1|4|C|190
3JAN|1|4|C|191
3JAN|1|4|A|192
3JAN|1|4|G|193
3JAN|1|4|G|194
3JAN|1|4|U|195
*
3JAN|1|4|G|204
3JAN|1|4|A|205
3JAN|1|4|G|206
3JAN|1|4|C|207
3JAN|1|4|A|208
3JAN|1|4|G|209

Current chains

Chain 4

SRP 7S RNA

Nearby chains

Chain 9

SRP19

Chain z

SRP54