IL_3JAN_021

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GU*AGC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAN_021 not in the Motif Atlas

Geometric match to IL_4UYK_002

Geometric discrepancy: 0.2798

The information below is about IL_4UYK_002

Detailed Annotation

Not an internal loop

Broad Annotation

Not an internal loop

Motif group

IL_06586.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

3JAN|1|5|G|285
3JAN|1|5|U|286
*
3JAN|1|5|A|300
3JAN|1|5|G|301
3JAN|1|5|C|302

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain N

Ribosomal protein eL15

Chain i

Ribosomal protein eL36