IL_3JAN_033

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GCCCGG*UC

Length

8 nucleotides

Bulged bases

3JAN|1|5|C|501, 3JAN|1|5|C|502, 3JAN|1|5|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAN_033 not in the Motif Atlas

Geometric match to IL_4V9F_005

Geometric discrepancy: 0.2569

The information below is about IL_4V9F_005

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_90729.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

30

Unit IDs

3JAN|1|5|G|500
3JAN|1|5|C|501
3JAN|1|5|C|502
3JAN|1|5|C|503
3JAN|1|5|G|504
3JAN|1|5|G|505
*
3JAN|1|5|U|653
3JAN|1|5|C|654

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain C

Ribosomal protein uL4

Chain Q

Ribosomal protein eL18