IL_3JAN_035

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CUUUC*GGG

Length

8 nucleotides

Bulged bases

3JAN|1|5|U|513, 3JAN|1|5|U|514

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAN_035 not in the Motif Atlas

Geometric match to IL_1U6B_001

Geometric discrepancy: 0.2842

The information below is about IL_1U6B_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_57744.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

22

Unit IDs

3JAN|1|5|C|511
3JAN|1|5|U|512
3JAN|1|5|U|513
3JAN|1|5|U|514
3JAN|1|5|C|515
*
3JAN|1|5|G|646
3JAN|1|5|G|647
3JAN|1|5|G|648

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain L

Ribosomal protein eL13

Chain a

Ribosomal protein uL15