IL_3JAN_053

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAN_053 not in the Motif Atlas

Geometric match to IL_1SAQ_002

Geometric discrepancy: 0.1566

The information below is about IL_1SAQ_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.13

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

3JAN|1|5|C|1431
3JAN|1|5|G|1432
3JAN|1|5|A|1433
3JAN|1|5|G|1434
*
3JAN|1|5|C|1450
3JAN|1|5|G|1451
3JAN|1|5|A|1452
3JAN|1|5|G|1453

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain Q

Ribosomal protein eL18