IL_3JAN_056

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CCGAAAG*CUAGUAGCUG

Length

17 nucleotides

Bulged bases

3JAN|1|5|A|1650, 3JAN|1|5|G|1654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAN|1|5|C|1520
3JAN|1|5|C|1521
3JAN|1|5|G|1522
3JAN|1|5|A|1523
3JAN|1|5|A|1524
3JAN|1|5|A|1525
3JAN|1|5|G|1526
*
3JAN|1|5|C|1648
3JAN|1|5|U|1649
3JAN|1|5|A|1650
3JAN|1|5|G|1651
3JAN|1|5|U|1652
3JAN|1|5|A|1653
3JAN|1|5|G|1654
3JAN|1|5|C|1655
3JAN|1|5|U|1656
3JAN|1|5|G|1657

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain C

Ribosomal protein uL4

Chain L

Ribosomal protein eL13

Chain N

Ribosomal protein eL15

Chain a

Ribosomal protein uL15

Chain j

Ribosomal protein eL37