3D structure

PDB id
3JAN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the scanning state of the mammalian SRP-ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.75 Å

Loop

Sequence
AUUA*UUCU
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3JAN_067 not in the Motif Atlas
Geometric match to IL_5TBW_041
Geometric discrepancy: 0.1816
The information below is about IL_5TBW_041
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_36174.1
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
15

Unit IDs

3JAN|1|5|A|1746
3JAN|1|5|U|1747
3JAN|1|5|U|1748
3JAN|1|5|A|1749
*
3JAN|1|5|U|1781
3JAN|1|5|U|1782
3JAN|1|5|C|1783
3JAN|1|5|U|1784

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain 7
5S ribosomal RNA; 5S rRNA
Chain D
Ribosomal protein uL18
Chain I
Ribosomal protein uL16

Coloring options:


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