3D structure

PDB id
3JAN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the scanning state of the mammalian SRP-ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.75 Å

Loop

Sequence
GUGGC*GAAUC
Length
10 nucleotides
Bulged bases
3JAN|1|5|G|1975
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3JAN_081 not in the Motif Atlas
Homologous match to IL_8C3A_058
Geometric discrepancy: 0.5653
The information below is about IL_8C3A_058
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_30542.5
Basepair signature
cWW-L-R-L-R-L-cWW
Number of instances in this motif group
2

Unit IDs

3JAN|1|5|G|1973
3JAN|1|5|U|1974
3JAN|1|5|G|1975
3JAN|1|5|G|1976
3JAN|1|5|C|1977
*
3JAN|1|5|G|1989
3JAN|1|5|A|1990
3JAN|1|5|A|1991
3JAN|1|5|U|1992
3JAN|1|5|C|1993

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain I
Ribosomal protein uL16
Chain K
Ribosomal protein uL11
Chain q
Ribosomal protein uL10

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2273 s
Application loaded.