IL_3JAN_082

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GAGUG*CUC

Length

8 nucleotides

Bulged bases

3JAN|1|5|A|2002

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAN_082 not in the Motif Atlas

Homologous match to IL_8C3A_059

Geometric discrepancy: 0.1984

The information below is about IL_8C3A_059

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

3JAN|1|5|G|2001
3JAN|1|5|A|2002
3JAN|1|5|G|2003
3JAN|1|5|U|2004
3JAN|1|5|G|2005
*
3JAN|1|5|C|2014
3JAN|1|5|U|2015
3JAN|1|5|C|2016

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain K

Ribosomal protein uL11