IL_3JAN_089

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UGAAC*GAA

Length

8 nucleotides

Bulged bases

3JAN|1|5|A|2428

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAN_089 not in the Motif Atlas

Geometric match to IL_7A0S_047

Geometric discrepancy: 0.3602

The information below is about IL_7A0S_047

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_83150.2

Basepair signature

cWW-tHH-cWW-L-L

Number of instances in this motif group

4

Unit IDs

3JAN|1|5|U|2415
3JAN|1|5|G|2416
3JAN|1|5|A|2417
3JAN|1|5|A|2418
3JAN|1|5|C|2419
*
3JAN|1|5|G|2427
3JAN|1|5|A|2428
3JAN|1|5|A|2429

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain P

Ribosomal protein uL22

Chain R

Ribosomal protein eL19

Chain l

Ribosomal protein eL39