IL_3JAN_097

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

AGGGCAG*CGUGCCUU

Length

15 nucleotides

Bulged bases

3JAN|1|5|U|2687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAN|1|5|A|2642
3JAN|1|5|G|2643
3JAN|1|5|G|2644
3JAN|1|5|G|2645
3JAN|1|5|C|2646
3JAN|1|5|A|2647
3JAN|1|5|G|2648
*
3JAN|1|5|C|2685
3JAN|1|5|G|2686
3JAN|1|5|U|2687
3JAN|1|5|G|2688
3JAN|1|5|C|2689
3JAN|1|5|C|2690
3JAN|1|5|U|2691
3JAN|1|5|U|2692

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain g

Ribosomal protein eL34

Chain k

Ribosomal protein eL38