IL_3JAN_105

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

3JAN|1|5|U|2880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAN_105 not in the Motif Atlas

Geometric match to IL_4V9F_063

Geometric discrepancy: 0.1431

The information below is about IL_4V9F_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_47346.2

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

3JAN|1|5|C|2867
3JAN|1|5|G|2868
3JAN|1|5|U|2869
3JAN|1|5|A|2870
3JAN|1|5|A|2871
3JAN|1|5|C|2872
*
3JAN|1|5|G|2877
3JAN|1|5|G|2878
3JAN|1|5|A|2879
3JAN|1|5|U|2880
3JAN|1|5|A|2881
3JAN|1|5|A|2882
3JAN|1|5|G|2883

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain n

Ribosomal protein eL41

Chain p

Ribosomal protein eL43