IL_3JAN_108

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GGGUC*GGCGCCUAGC

Length

15 nucleotides

Bulged bases

3JAN|1|5|U|3595, 3JAN|1|5|A|3596

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAN|1|5|G|2901
3JAN|1|5|G|2902
3JAN|1|5|G|2903
3JAN|1|5|U|2904
3JAN|1|5|C|2905
*
3JAN|1|5|G|3589
3JAN|1|5|G|3590
3JAN|1|5|C|3591
3JAN|1|5|G|3592
3JAN|1|5|C|3593
3JAN|1|5|C|3594
3JAN|1|5|U|3595
3JAN|1|5|A|3596
3JAN|1|5|G|3597
3JAN|1|5|C|3598

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain R

Ribosomal protein eL19

Chain SI

Ribosomal protein eS8

Chain SL

Ribosomal protein uS17