3D structure

PDB id
3JAN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the scanning state of the mammalian SRP-ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.75 Å

Loop

Sequence
GC*GCAU
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3JAN_113 not in the Motif Atlas
Homologous match to IL_5TBW_089
Geometric discrepancy: 0.2418
The information below is about IL_5TBW_089
Detailed Annotation
Bulged stacked bases
Broad Annotation
Bulged stacked bases
Motif group
IL_22551.1
Basepair signature
cWW-L-cWW-L
Number of instances in this motif group
9

Unit IDs

3JAN|1|5|G|3780
3JAN|1|5|C|3781
*
3JAN|1|5|G|3811
3JAN|1|5|C|3812
3JAN|1|5|A|3813
3JAN|1|5|U|3814

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain 3
Transfer RNA; tRNA
Chain n
Ribosomal protein eL41

Coloring options:


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