IL_3JAN_114

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CCAAAUGCCUCGUCA*UGACGCG

Length

22 nucleotides

Bulged bases

3JAN|1|5|A|3785, 3JAN|1|5|C|3791, 3JAN|1|5|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAN|1|5|C|3781
3JAN|1|5|C|3782
3JAN|1|5|A|3783
3JAN|1|5|A|3784
3JAN|1|5|A|3785
3JAN|1|5|U|3786
3JAN|1|5|G|3787
3JAN|1|5|C|3788
3JAN|1|5|C|3789
3JAN|1|5|U|3790
3JAN|1|5|C|3791
3JAN|1|5|G|3792
3JAN|1|5|U|3793
3JAN|1|5|C|3794
3JAN|1|5|A|3795
*
3JAN|1|5|U|3805
3JAN|1|5|G|3806
3JAN|1|5|A|3807
3JAN|1|5|C|3808
3JAN|1|5|G|3809
3JAN|1|5|C|3810
3JAN|1|5|G|3811

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain S2

Small subunit ribosomal RNA; SSU rRNA

Chain n

Ribosomal protein eL41