IL_3JAN_117

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GUU*AC

Length

5 nucleotides

Bulged bases

3JAN|1|5|U|3914

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAN_117 not in the Motif Atlas

Homologous match to IL_5TBW_093

Geometric discrepancy: 0.2246

The information below is about IL_5TBW_093

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

3JAN|1|5|G|3913
3JAN|1|5|U|3914
3JAN|1|5|U|3915
*
3JAN|1|5|A|4388
3JAN|1|5|C|4389

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain C

Ribosomal protein uL4

Chain a

Ribosomal protein uL15

Chain b

Ribosomal protein eL29