3D structure

PDB id
3JAN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the scanning state of the mammalian SRP-ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.75 Å

Loop

Sequence
GAGCUC*GAGCAGAAGGGCAAAAGCUC
Length
26 nucleotides
Bulged bases
3JAN|1|5|A|4280
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
Not in a motif group
Basepair signature
Not available
Number of instances in this motif group
0

Unit IDs

3JAN|1|5|G|4238
3JAN|1|5|A|4239
3JAN|1|5|G|4240
3JAN|1|5|C|4241
3JAN|1|5|U|4242
3JAN|1|5|C|4243
*
3JAN|1|5|G|4267
3JAN|1|5|A|4268
3JAN|1|5|G|4269
3JAN|1|5|C|4270
3JAN|1|5|A|4271
3JAN|1|5|G|4272
3JAN|1|5|A|4273
3JAN|1|5|A|4274
3JAN|1|5|G|4275
3JAN|1|5|G|4276
3JAN|1|5|G|4277
3JAN|1|5|C|4278
3JAN|1|5|A|4279
3JAN|1|5|A|4280
3JAN|1|5|A|4281
3JAN|1|5|A|4282
3JAN|1|5|G|4283
3JAN|1|5|C|4284
3JAN|1|5|U|4285
3JAN|1|5|C|4286

Current chains

Chain 5
28S ribosomal RNA

Nearby chains

Chain 3
Transfer RNA; tRNA
Chain 7
5S ribosomal RNA; 5S rRNA
Chain D
Ribosomal protein uL18
Chain I
Ribosomal protein uL16
Chain J
Ribosomal protein uL5
Chain T
Ribosomal protein eL21
Chain o
Ribosomal protein eL42

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