IL_3JAN_135

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GACCG*CAGGUU

Length

11 nucleotides

Bulged bases

3JAN|1|5|A|4548

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAN|1|5|G|4534
3JAN|1|5|A|4535
3JAN|1|5|C|4536
3JAN|1|5|C|4537
3JAN|1|5|G|4538
*
3JAN|1|5|C|4547
3JAN|1|5|A|4548
3JAN|1|5|G|4549
3JAN|1|5|G|4550
3JAN|1|5|U|4551
3JAN|1|5|U|4552

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain 3

Transfer RNA; tRNA

Chain A

Ribosomal protein uL2

Chain I

Ribosomal protein uL16