IL_3JAN_142

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GUGUAUG*CGAAGC

Length

13 nucleotides

Bulged bases

3JAN|1|5|U|4634, 3JAN|1|5|U|4636

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAN|1|5|G|4631
3JAN|1|5|U|4632
3JAN|1|5|G|4633
3JAN|1|5|U|4634
3JAN|1|5|A|4635
3JAN|1|5|U|4636
3JAN|1|5|G|4637
*
3JAN|1|5|C|4662
3JAN|1|5|G|4663
3JAN|1|5|A|4664
3JAN|1|5|A|4665
3JAN|1|5|G|4666
3JAN|1|5|C|4667

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain B

Ribosomal protein uL3

Chain V

Ribosomal protein uL14

Chain W

Ribosomal protein eL24

Chain d

Ribosomal protein eL31