IL_3JAN_147

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GCCUCGGAUAGC*GUGCGGAGUGC

Length

23 nucleotides

Bulged bases

3JAN|1|5|C|4756, 3JAN|1|5|C|4757, 3JAN|1|5|U|4763, 3JAN|1|5|C|4871, 3JAN|1|5|A|4874, 3JAN|1|5|G|4877

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAN|1|5|G|4755
3JAN|1|5|C|4756
3JAN|1|5|C|4757
3JAN|1|5|U|4758
3JAN|1|5|C|4759
3JAN|1|5|G|4760
3JAN|1|5|G|4761
3JAN|1|5|A|4762
3JAN|1|5|U|4763
3JAN|1|5|A|4764
3JAN|1|5|G|4765
3JAN|1|5|C|4766
*
3JAN|1|5|G|4868
3JAN|1|5|U|4869
3JAN|1|5|G|4870
3JAN|1|5|C|4871
3JAN|1|5|G|4872
3JAN|1|5|G|4873
3JAN|1|5|A|4874
3JAN|1|5|G|4875
3JAN|1|5|U|4876
3JAN|1|5|G|4877
3JAN|1|5|C|4878

Current chains

Chain 5

28S ribosomal RNA

Nearby chains

Chain E

Ribosomal protein eL6

Chain H

Ribosomal protein uL6

Chain M

Ribosomal protein eL14

Chain O

Ribosomal protein uL13

Chain S

Ribosomal protein eL20