IL_3JAN_150

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

3JAN|1|5|C|4900

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAN_150 not in the Motif Atlas

Geometric match to IL_8GLP_165

Geometric discrepancy: 0.3977

The information below is about IL_8GLP_165

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.5

Basepair signature

cWW-L-cWW

Number of instances in this motif group

67

Unit IDs

3JAN|1|5|G|4899
3JAN|1|5|C|4900
3JAN|1|5|G|4901
*
3JAN|1|5|C|4920
3JAN|1|5|C|4921

Current chains

Chain 5

28S ribosomal RNA

Nearby chains