IL_3JAN_155

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CA*UCG

Length

5 nucleotides

Bulged bases

3JAN|1|7|C|63

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAN_155 not in the Motif Atlas

Homologous match to IL_8P9A_364

Geometric discrepancy: 0.1487

The information below is about IL_8P9A_364

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

3JAN|1|7|C|15
3JAN|1|7|A|16
*
3JAN|1|7|U|62
3JAN|1|7|C|63
3JAN|1|7|G|64

Current chains

Chain 7

5S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain D

Ribosomal protein uL18

Chain I

Ribosomal protein uL16

Chain J

Ribosomal protein uL5