IL_3JAN_162

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GCAUAUG*CGUAUAU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAN|1|S2|G|23
3JAN|1|S2|C|24
3JAN|1|S2|A|25
3JAN|1|S2|U|26
3JAN|1|S2|A|27
3JAN|1|S2|U|28
3JAN|1|S2|G|29
*
3JAN|1|S2|C|645
3JAN|1|S2|G|646
3JAN|1|S2|U|647
3JAN|1|S2|A|648
3JAN|1|S2|U|649
3JAN|1|S2|A|650
3JAN|1|S2|U|651

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SJ

Ribosomal protein uS4

Chain SX

Ribosomal protein uS12