IL_3JAN_169

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UGGU*AA

Length

6 nucleotides

Bulged bases

3JAN|1|S2|G|113

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAN_169 not in the Motif Atlas

Geometric match to IL_8C3A_400

Geometric discrepancy: 0.1825

The information below is about IL_8C3A_400

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.2

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

3JAN|1|S2|U|112
3JAN|1|S2|G|113
3JAN|1|S2|G|114
3JAN|1|S2|U|115
*
3JAN|1|S2|A|348
3JAN|1|S2|A|349

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SE

Ribosomal protein eS4

Chain SI

Ribosomal protein eS8

Chain SL

Ribosomal protein uS17