IL_3JAN_173

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CUGAC*GGAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAN_173 not in the Motif Atlas

Geometric match to IL_4WFL_001

Geometric discrepancy: 0.3396

The information below is about IL_4WFL_001

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

3JAN|1|S2|C|188
3JAN|1|S2|U|189
3JAN|1|S2|G|190
3JAN|1|S2|A|191
3JAN|1|S2|C|192
*
3JAN|1|S2|G|207
3JAN|1|S2|G|208
3JAN|1|S2|A|209
3JAN|1|S2|U|210
3JAN|1|S2|G|211

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SI

Ribosomal protein eS8