IL_3JAN_180

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GAA*UC

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAN_180 not in the Motif Atlas

Geometric match to IL_5TBW_070

Geometric discrepancy: 0.2752

The information below is about IL_5TBW_070

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_05035.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

38

Unit IDs

3JAN|1|S2|G|413
3JAN|1|S2|A|414
3JAN|1|S2|A|415
*
3JAN|1|S2|U|423
3JAN|1|S2|C|424

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SJ

Ribosomal protein uS4

Chain SL

Ribosomal protein uS17

Chain SX

Ribosomal protein uS12