IL_3JAN_185

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

AAU*AAUU

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAN_185 not in the Motif Atlas

Geometric match to IL_5UNE_009

Geometric discrepancy: 0.2106

The information below is about IL_5UNE_009

Detailed Annotation

Isolated non-canonical cWW contact

Broad Annotation

No text annotation

Motif group

IL_44465.1

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

9

Unit IDs

3JAN|1|S2|A|528
3JAN|1|S2|A|529
3JAN|1|S2|U|530
*
3JAN|1|S2|A|554
3JAN|1|S2|A|555
3JAN|1|S2|U|556
3JAN|1|S2|U|557

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SJ

Ribosomal protein uS4

Chain Se

Ribosomal protein eS30