IL_3JAN_186

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UACAGGAC*GGCCCUGUA

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAN|1|S2|U|530
3JAN|1|S2|A|531
3JAN|1|S2|C|532
3JAN|1|S2|A|533
3JAN|1|S2|G|534
3JAN|1|S2|G|535
3JAN|1|S2|A|536
3JAN|1|S2|C|537
*
3JAN|1|S2|G|546
3JAN|1|S2|G|547
3JAN|1|S2|C|548
3JAN|1|S2|C|549
3JAN|1|S2|C|550
3JAN|1|S2|U|551
3JAN|1|S2|G|552
3JAN|1|S2|U|553
3JAN|1|S2|A|554

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SJ

Ribosomal protein uS4

Chain Se

Ribosomal protein eS30