3D structure

PDB id
3JAN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the scanning state of the mammalian SRP-ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.75 Å

Loop

Sequence
GGACCGC*GAGGCC
Length
13 nucleotides
Bulged bases
3JAN|1|S2|C|877
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3JAN_198 not in the Motif Atlas
Geometric match to IL_6O5F_001
Geometric discrepancy: 0.3832
The information below is about IL_6O5F_001
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_31007.1
Basepair signature
cWW-L-R-L-R-L-R-L-R-cWW
Number of instances in this motif group
5

Unit IDs

3JAN|1|S2|G|873
3JAN|1|S2|G|874
3JAN|1|S2|A|875
3JAN|1|S2|C|876
3JAN|1|S2|C|877
3JAN|1|S2|G|878
3JAN|1|S2|C|879
*
3JAN|1|S2|G|907
3JAN|1|S2|A|908
3JAN|1|S2|G|909
3JAN|1|S2|G|910
3JAN|1|S2|C|911
3JAN|1|S2|C|912

Current chains

Chain S2
18S ribosomal RNA

Nearby chains

Chain R
Ribosomal protein eL19
Chain SH
Ribosomal protein eS7
Chain SL
Ribosomal protein uS17

Coloring options:


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