IL_3JAN_198
3D structure
- PDB id
- 3JAN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the scanning state of the mammalian SRP-ribosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.75 Å
Loop
- Sequence
- GGACCGC*GAGGCC
- Length
- 13 nucleotides
- Bulged bases
- 3JAN|1|S2|C|877
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_3JAN_198 not in the Motif Atlas
- Geometric match to IL_6O5F_001
- Geometric discrepancy: 0.3832
- The information below is about IL_6O5F_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31007.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 5
Unit IDs
3JAN|1|S2|G|873
3JAN|1|S2|G|874
3JAN|1|S2|A|875
3JAN|1|S2|C|876
3JAN|1|S2|C|877
3JAN|1|S2|G|878
3JAN|1|S2|C|879
*
3JAN|1|S2|G|907
3JAN|1|S2|A|908
3JAN|1|S2|G|909
3JAN|1|S2|G|910
3JAN|1|S2|C|911
3JAN|1|S2|C|912
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain R
- Ribosomal protein eL19
- Chain SH
- Ribosomal protein eS7
- Chain SL
- Ribosomal protein uS17
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