IL_3JAN_199

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

AG*CAUU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAN_199 not in the Motif Atlas

Geometric match to IL_4V88_428

Geometric discrepancy: 0.1852

The information below is about IL_4V88_428

Detailed Annotation

Major groove platform; stack outside cWW

Broad Annotation

No text annotation

Motif group

IL_50694.4

Basepair signature

cWW-cWW-tSH-cWW-R

Number of instances in this motif group

28

Unit IDs

3JAN|1|S2|A|922
3JAN|1|S2|G|923
*
3JAN|1|S2|C|1019
3JAN|1|S2|A|1020
3JAN|1|S2|U|1021
3JAN|1|S2|U|1022

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SN

Ribosomal protein uS15

Chain SW

Ribosomal protein uS8

Chain Sb

Ribosomal protein eS27