IL_3JAN_204

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UAU*AGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAN_204 not in the Motif Atlas

Geometric match to IL_3HHN_004

Geometric discrepancy: 0.1807

The information below is about IL_3HHN_004

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

3JAN|1|S2|U|943
3JAN|1|S2|A|944
3JAN|1|S2|U|945
*
3JAN|1|S2|A|981
3JAN|1|S2|G|982
3JAN|1|S2|A|983

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain A

Ribosomal protein uL2

Chain SB

Ribosomal protein eS1

Chain SO

Ribosomal protein uS11