3D structure

PDB id
3JAN (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the scanning state of the mammalian SRP-ribosome complex
Experimental method
ELECTRON MICROSCOPY
Resolution
3.75 Å

Loop

Sequence
AGGUUC*GUU
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_3JAN_206 not in the Motif Atlas
Geometric match to IL_4V88_435
Geometric discrepancy: 0.2887
The information below is about IL_4V88_435
Detailed Annotation
Other IL
Broad Annotation
Other IL
Motif group
IL_22046.1
Basepair signature
cWW-L-cWW-L-cWW-L
Number of instances in this motif group
2

Unit IDs

3JAN|1|S2|A|1042
3JAN|1|S2|G|1043
3JAN|1|S2|G|1044
3JAN|1|S2|U|1045
3JAN|1|S2|U|1046
3JAN|1|S2|C|1047
*
3JAN|1|S2|G|1071
3JAN|1|S2|U|1072
3JAN|1|S2|U|1073

Current chains

Chain S2
18S ribosomal RNA

Nearby chains

Chain 5
Large subunit ribosomal RNA; LSU rRNA
Chain A
Ribosomal protein uL2
Chain SO
Ribosomal protein uS11
Chain Sa
Ribosomal protein eS26

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