IL_3JAN_206

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

AGGUUC*GUU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAN_206 not in the Motif Atlas

Geometric match to IL_4V88_435

Geometric discrepancy: 0.2887

The information below is about IL_4V88_435

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_22046.1

Basepair signature

cWW-L-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

3JAN|1|S2|A|1042
3JAN|1|S2|G|1043
3JAN|1|S2|G|1044
3JAN|1|S2|U|1045
3JAN|1|S2|U|1046
3JAN|1|S2|C|1047
*
3JAN|1|S2|G|1071
3JAN|1|S2|U|1072
3JAN|1|S2|U|1073

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain A

Ribosomal protein uL2

Chain SO

Ribosomal protein uS11

Chain Sa

Ribosomal protein eS26