IL_3JAN_207

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

CGAAGACG*CGUCGUAG

Length

16 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAN|1|S2|C|1047
3JAN|1|S2|G|1048
3JAN|1|S2|A|1049
3JAN|1|S2|A|1050
3JAN|1|S2|G|1051
3JAN|1|S2|A|1052
3JAN|1|S2|C|1053
3JAN|1|S2|G|1054
*
3JAN|1|S2|C|1064
3JAN|1|S2|G|1065
3JAN|1|S2|U|1066
3JAN|1|S2|C|1067
3JAN|1|S2|G|1068
3JAN|1|S2|U|1069
3JAN|1|S2|A|1070
3JAN|1|S2|G|1071

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain 5

Large subunit ribosomal RNA; LSU rRNA

Chain A

Ribosomal protein uL2

Chain SO

Ribosomal protein uS11

Chain Sa

Ribosomal protein eS26

Chain n

Ribosomal protein eL41