IL_3JAN_210

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

UUGACG*UGUACA

Length

12 nucleotides

Bulged bases

3JAN|1|S2|A|1695

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

3JAN|1|S2|U|1201
3JAN|1|S2|U|1202
3JAN|1|S2|G|1203
3JAN|1|S2|A|1204
3JAN|1|S2|C|1205
3JAN|1|S2|G|1206
*
3JAN|1|S2|U|1692
3JAN|1|S2|G|1693
3JAN|1|S2|U|1694
3JAN|1|S2|A|1695
3JAN|1|S2|C|1696
3JAN|1|S2|A|1697

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SC

Ribosomal protein uS5

Chain Sa

Ribosomal protein eS26