IL_3JAN_217

3D structure

PDB id

3JAN (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the scanning state of the mammalian SRP-ribosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.75 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

3JAN|1|S2|U|1326

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_3JAN_217 not in the Motif Atlas

Homologous match to IL_4V88_449

Geometric discrepancy: 0.1878

The information below is about IL_4V88_449

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

3JAN|1|S2|G|1325
3JAN|1|S2|U|1326
3JAN|1|S2|G|1327
*
3JAN|1|S2|C|1502
3JAN|1|S2|C|1503

Current chains

Chain S2

18S ribosomal RNA

Nearby chains

Chain SK

Ribosomal protein eS10

Chain Sd

Ribosomal protein uS14

Chain Sf

Ribosomal protein eS31